STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAU43440.1COG1593 TRAP-type C4-dicarboxylate transport system, large permease component. (428 aa)    
Predicted Functional Partners:
EAU43442.1
COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component.
 
    0.950
EAU43441.1
Hypothetical protein; COG3090 TRAP-type C4-dicarboxylate transport system, small permease component.
  
  0.853
EAU44760.1
Putative periplasmic binding protein; COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component.
 
    0.790
EAU46803.1
COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component.
 
    0.781
EAU47260.1
COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component.
  
    0.780
EAU44749.1
Putative ABC transporter periplasmic solute-binding protein; COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component.
 
    0.773
EAU47948.1
Putative periplasmic binding protein; COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component.
 
    0.772
EAU45444.1
COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component.
 
    0.768
EAU44807.1
TRAP-T family transporter, periplasmic binding protein, DctP; COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component.
  
    0.765
EAU48560.1
Dicarboxylate transporter DctP subunit family protein; COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component.
 
    0.764
Your Current Organism:
Salipiger bermudensis
NCBI taxonomy Id: 314265
Other names: Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601, S. bermudensis HTCC2601, Salipiger bermudensis HTCC2601
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.