STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAU43579.1Glucose-inhibited division protein A. (73 aa)    
Predicted Functional Partners:
trmFO
Glucose-inhibited division protein A; Catalyzes the folate-dependent formation of 5-methyl-uridine at position 54 (M-5-U54) in all tRNAs; Belongs to the MnmG family. TrmFO subfamily.
       0.812
EAU45244.1
Hypothetical protein.
  
     0.692
EAU45133.1
Transcriptional regulator TetR family protein; COG1309 Transcriptional regulator.
  
     0.481
EAU45998.1
COG4950 Uncharacterized protein conserved in bacteria.
  
     0.460
EAU46006.1
Lipoprotein, putative; COG3009 Uncharacterized protein conserved in bacteria.
  
     0.452
EAU46007.1
Paraquat-inducible protein, putative; COG3008 Paraquat-inducible protein B.
  
     0.452
EAU43396.1
Hypothetical protein.
  
     0.449
EAU45556.1
Hypothetical protein; COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains).
  
     0.438
EAU45996.1
Hypothetical protein.
  
     0.421
EAU43792.1
COG1640 4-alpha-glucanotransferase.
  
     0.408
Your Current Organism:
Salipiger bermudensis
NCBI taxonomy Id: 314265
Other names: Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601, S. bermudensis HTCC2601, Salipiger bermudensis HTCC2601
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