STRINGSTRING
R2601_25026 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_25026" - GfdT protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_25026GfdT protein (373 aa)    
Predicted Functional Partners:
R2601_25031
Signal transduction histidine kinase (738 aa)
 
     
  0.977
R2601_25021
DNA-binding response regulator, LuxR family protein (234 aa)
 
     
  0.870
R2601_18785
Uncharacterized protein (320 aa)
 
          0.777
R2601_18790
Uncharacterized protein (388 aa)
 
          0.771
R2601_18795
Cytochrome c550, putative (224 aa)
 
          0.769
R2601_05003
Uncharacterized protein (323 aa)
 
          0.767
R2601_18800
Amino acid ABC transporter, periplasmic substrate-binding protein, putative (290 aa)
 
          0.765
R2601_18770
Quinoprotein ethanol dehydrogenase (588 aa)
 
          0.761
R2601_04998
Uncharacterized protein (381 aa)
 
          0.758
R2601_18810
Regulatory protein, putative (696 aa)
 
          0.717
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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