STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAU46221.1GfdT protein. (373 aa)    
Predicted Functional Partners:
EAU46222.1
COG0642 Signal transduction histidine kinase.
  
 0.955
EAU46537.1
Cytochrome c550, putative; COG2010 Cytochrome c, mono- and diheme variants.
  
    0.902
EAU46220.1
DNA-binding response regulator, LuxR family protein; COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain.
 
    0.865
EAU43816.1
Putative porin; COG3203 Outer membrane protein (porin).
  
    0.701
EAU46538.1
COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain.
  
     0.687
EAU47067.1
Putative sensor histidine kinase protein; COG0642 Signal transduction histidine kinase.
  
 0.675
EAU46532.1
Quinoprotein ethanol dehydrogenase; COG4993 Glucose dehydrogenase.
 
    0.674
EAU46536.1
Hypothetical protein.
  
     0.628
EAU46535.1
Hypothetical protein.
  
     0.623
EAU46540.1
Regulatory protein, putative; COG3901 Regulator of nitric oxide reductase transcription.
 
     0.618
Your Current Organism:
Salipiger bermudensis
NCBI taxonomy Id: 314265
Other names: Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601, S. bermudensis HTCC2601, Salipiger bermudensis HTCC2601
Server load: low (24%) [HD]