STRINGSTRING
R2601_25346 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_25346" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_25346Uncharacterized protein (238 aa)    
Predicted Functional Partners:
R2601_25361
O-acetylserine (Thiol)-lyase, cysteine synthase (342 aa)
              0.887
R2601_25351
Mechanosensitive ion channel family protein (422 aa)
              0.881
R2601_25356
Mechanosensitive ion channel family protein (419 aa)
              0.859
R2601_25366
Tellurite resistance protein (375 aa)
              0.735
R2601_25371
Tellurite resistance protein (134 aa)
              0.678
alaS
Alanyl-tRNA synthetase ; Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction- alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain (891 aa)
       
0.578
R2601_26906
Dihydrolipoyl dehydrogenase (464 aa)
       
      0.487
R2601_17264
Mercuric reductase, putative (395 aa)
       
      0.487
R2601_14175
Dihydrolipoamide dehydrogenase (466 aa)
       
      0.487
R2601_10854
Dihydrolipoyl dehydrogenase (464 aa)
       
      0.487
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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