STRINGSTRING
R2601_25521 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_25521" - ArsC family protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_25521ArsC family protein (106 aa)    
Predicted Functional Partners:
R2601_19185
Low molecular weight phosphotyrosine protein phosphatase (151 aa)
   
 
  0.659
R2601_16835
Transcriptional regulator/arsenate reductase (264 aa)
   
 
  0.659
R2601_09350
Arsenate reductase (148 aa)
   
 
  0.659
rpoA
Transcriptase subunit alpha ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (338 aa)
       
      0.643
R2601_18023
Putative transcriptional regulator (223 aa)
 
 
  0.549
R2601_00785
Two component, sigma54 specific, transcriptional regulator, Fis family protein (136 aa)
   
          0.515
R2601_25526
Cold shock family protein (68 aa)
              0.511
R2601_25741
NADPH-dependent FMN reductase (181 aa)
         
  0.502
R2601_24529
NAD(P)H dehydrogenase (Quinone)-NADPH-dependent FMN reductase (187 aa)
         
  0.502
R2601_11514
Uncharacterized protein (188 aa)
         
  0.502
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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