STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAU45985.1NADH-dependent flavin oxidoreductase, Oye family protein; COG1902 NADH:flavin oxidoreductases, Old Yellow Enzyme family. (364 aa)    
Predicted Functional Partners:
EAU45174.1
Glutamate synthase, large subunit; COG0067 Glutamate synthase domain 1.
    
 0.844
EAU48734.1
COG2086 Electron transfer flavoprotein, beta subunit.
   
 
 0.677
EAU46094.1
COG2086 Electron transfer flavoprotein, beta subunit.
   
 
 0.677
EAU45984.1
Hypothetical protein.
       0.570
EAU48741.1
COG2025 Electron transfer flavoprotein, alpha subunit.
   
 
 0.518
EAU46095.1
COG2025 Electron transfer flavoprotein, alpha subunit.
   
 
 0.518
EAU45710.1
3-ketosteroid dehydrogenase, putative; COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit.
   
  0.502
EAU45656.1
Transcriptional regulator, CarD family protein; COG1329 Transcriptional regulators, similar to M. xanthus CarD.
   
    0.489
EAU45986.1
Hypothetical protein.
       0.432
Your Current Organism:
Salipiger bermudensis
NCBI taxonomy Id: 314265
Other names: Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601, S. bermudensis HTCC2601, Salipiger bermudensis HTCC2601
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