STRINGSTRING
R2601_27061 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_27061" - RDD family protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_27061RDD family protein (149 aa)    
Predicted Functional Partners:
R2601_19352
Peptidoglycan binding domain protein (579 aa)
   
          0.721
R2601_15382
Uncharacterized protein (309 aa)
   
          0.702
R2601_09078
Lipoprotein, putative (286 aa)
   
          0.702
R2601_25516
Uncharacterized protein (190 aa)
   
          0.694
R2601_23435
Lipoprotein, putative (168 aa)
   
          0.688
R2601_27056
Uncharacterized protein (148 aa)
 
          0.687
R2601_16845
Uncharacterized protein (271 aa)
   
          0.681
R2601_26896
Uncharacterized protein (76 aa)
   
          0.667
R2601_09028
Uncharacterized protein (61 aa)
   
          0.662
R2601_14110
OmpA domain protein (517 aa)
   
          0.658
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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