Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EAT08024.1 | dapB | SKA58_08669 | SKA58_08679 | Hypothetical protein. | Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family. | 0.777 |
EAT08024.1 | nth | SKA58_08669 | SKA58_08674 | Hypothetical protein. | Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. | 0.777 |
EAT08972.1 | EAT09327.1 | SKA58_17822 | SKA58_03405 | COG0708 Exonuclease III. | HhH-GPD; Adenine glycosylase active on G-A mispairs. | 0.908 |
EAT08972.1 | EAT10171.1 | SKA58_17822 | SKA58_06920 | COG0708 Exonuclease III. | COG0708 Exonuclease III. | 0.921 |
EAT08972.1 | nth | SKA58_17822 | SKA58_08674 | COG0708 Exonuclease III. | Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. | 0.914 |
EAT08972.1 | polA | SKA58_17822 | SKA58_14682 | COG0708 Exonuclease III. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.909 |
EAT08972.1 | ung | SKA58_17822 | SKA58_14037 | COG0708 Exonuclease III. | uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine. | 0.839 |
EAT09327.1 | EAT08972.1 | SKA58_03405 | SKA58_17822 | HhH-GPD; Adenine glycosylase active on G-A mispairs. | COG0708 Exonuclease III. | 0.908 |
EAT09327.1 | EAT10171.1 | SKA58_03405 | SKA58_06920 | HhH-GPD; Adenine glycosylase active on G-A mispairs. | COG0708 Exonuclease III. | 0.896 |
EAT09327.1 | mutL | SKA58_03405 | SKA58_09101 | HhH-GPD; Adenine glycosylase active on G-A mispairs. | DNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | 0.511 |
EAT09327.1 | mutM | SKA58_03405 | SKA58_05020 | HhH-GPD; Adenine glycosylase active on G-A mispairs. | formamidopyrimidine-DNA glycosylase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. | 0.471 |
EAT09327.1 | nth | SKA58_03405 | SKA58_08674 | HhH-GPD; Adenine glycosylase active on G-A mispairs. | Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. | 0.703 |
EAT09327.1 | polA | SKA58_03405 | SKA58_14682 | HhH-GPD; Adenine glycosylase active on G-A mispairs. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.427 |
EAT09327.1 | ung | SKA58_03405 | SKA58_14037 | HhH-GPD; Adenine glycosylase active on G-A mispairs. | uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine. | 0.453 |
EAT10171.1 | EAT08972.1 | SKA58_06920 | SKA58_17822 | COG0708 Exonuclease III. | COG0708 Exonuclease III. | 0.921 |
EAT10171.1 | EAT09327.1 | SKA58_06920 | SKA58_03405 | COG0708 Exonuclease III. | HhH-GPD; Adenine glycosylase active on G-A mispairs. | 0.896 |
EAT10171.1 | nth | SKA58_06920 | SKA58_08674 | COG0708 Exonuclease III. | Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. | 0.984 |
EAT10171.1 | polA | SKA58_06920 | SKA58_14682 | COG0708 Exonuclease III. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.909 |
EAT10171.1 | ung | SKA58_06920 | SKA58_14037 | COG0708 Exonuclease III. | uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine. | 0.839 |
dapB | EAT08024.1 | SKA58_08679 | SKA58_08669 | Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family. | Hypothetical protein. | 0.777 |
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