STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAT08742.1Conjugation TrbI-like protein; COG2948 Type IV secretory pathway, VirB10 components. (410 aa)    
Predicted Functional Partners:
EAT08741.1
Conjugal transfer protein TrbG/VirB9/CagX; COG3504 Type IV secretory pathway, VirB9 components.
 
 0.999
EAT08852.1
Conjugal transfer protein trbG; COG3504 Type IV secretory pathway, VirB9 components.
 
 0.997
EAT08736.1
CagE, TrbE, VirB component of type IV transporter system; COG3451 Type IV secretory pathway, VirB4 components.
 
 0.986
EAT08452.1
COG3504 Type IV secretory pathway, VirB9 components.
 
 0.981
EAT08739.1
Probable conjugal transfer protein; COG3846 Type IV secretory pathway, TrbL components.
 
  
 0.980
EAT08740.1
Conjugal transfer protein; COG3701 Type IV secretory pathway, TrbF components.
 
  
 0.980
EAT08734.1
Conjugal transfer protein TrbC; COG3838 Type IV secretory pathway, VirB2 components (pilins).
 
  
 0.978
EAT08737.1
COG5314 Conjugal transfer/entry exclusion protein.
 
  
 0.978
EAT08735.1
Conjugal transfer protein trbD; COG5268 Type IV secretory pathway, TrbD component.
 
  
 0.977
EAT08733.1
Type II secretion system protein E; COG4962 Flp pilus assembly protein, ATPase CpaF.
 
  
 0.948
Your Current Organism:
Sphingomonas sp. SKA58
NCBI taxonomy Id: 314266
Other names: S. sp. SKA58
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.