STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAT08439.1Plasmid-related protein; COG3843 Type IV secretory pathway, VirD2 components (relaxase). (373 aa)    
Predicted Functional Partners:
EAT08438.1
Hypothetical protein.
       0.790
EAT08454.1
Hypothetical protein; COG3704 Type IV secretory pathway, VirB6 components.
  
     0.770
EAT09444.1
Possible ATP-dependent exodeoxyribonuclease (subunit A).
  
 0.768
EAT09149.1
UvrD/REP helicase; COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains); Belongs to the helicase family. UvrD subfamily.
  
 0.768
EAT08863.1
UvrD/REP helicase; COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains).
  
 0.768
EAT08453.1
COG3736 Type IV secretory pathway, component VirB8.
 
     0.767
EAT08452.1
COG3504 Type IV secretory pathway, VirB9 components.
  
     0.757
EAT09502.1
DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]
  
 
 0.737
EAT08459.1
Conjugal transfer protein.
  
     0.733
EAT08456.1
Hypothetical protein; COG3451 Type IV secretory pathway, VirB4 components.
  
     0.714
Your Current Organism:
Sphingomonas sp. SKA58
NCBI taxonomy Id: 314266
Other names: S. sp. SKA58
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.