STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAT07240.1COG3652 Predicted outer membrane protein. (162 aa)    
Predicted Functional Partners:
EAT08264.1
Glycosyl hydrolase; COG1523 Type II secretory pathway, pullulanase PulA and related glycosidases; Belongs to the glycosyl hydrolase 13 family.
   
    0.617
glgA
Glycogen/starch synthases, ADP-glucose type; Synthesizes alpha-1,4-glucan chains using ADP-glucose.
   
    0.571
EAT07876.1
Hypothetical protein.
  
     0.518
EAT07241.1
Hypothetical protein; COG3218 ABC-type uncharacterized transport system, auxiliary component.
  
     0.513
EAT08898.1
Putative sensory transduction regulatory protein; COG0784 FOG: CheY-like receiver.
  
     0.489
EAT07239.1
Hypothetical protein.
       0.477
EAT08255.1
Outer membrane autotransporter barrel protein; COG3210 Large exoproteins involved in heme utilization or adhesion.
  
     0.475
EAT09035.1
COG1629 Outer membrane receptor proteins, mostly Fe transport.
  
     0.464
EAT07813.1
Hypothetical protein.
  
     0.453
EAT08516.1
COG0500 SAM-dependent methyltransferases.
  
     0.429
Your Current Organism:
Sphingomonas sp. SKA58
NCBI taxonomy Id: 314266
Other names: S. sp. SKA58
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.