STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDZ41552.1Endoribonuclease L-PSP family protein; [J] COG0251 Putative translation initiation inhibitor, yjgF family. (74 aa)    
Predicted Functional Partners:
EDZ44150.1
FAD dependent oxidoreductase; [O] COG0492 Thioredoxin reductase.
     0.858
EDZ44202.1
[S] COG3342 Uncharacterized conserved protein.
 
     0.794
EDZ42273.1
Transcriptional regulator, LysR family; [K] COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.770
fusA
Translation elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 s [...]
    
  0.699
tmd
Trimethylamine dehydrogenase; [R] COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases.
 
     0.689
rph
Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.
  
   0.668
EDZ43893.1
Transcriptional regulator, LysR family; [K] COG0583 Transcriptional regulator; overlaps another CDS with the same product name; Belongs to the LysR transcriptional regulatory family.
       0.636
EDZ44607.1
Transcriptional regulator, LysR family; [K] COG0583 Transcriptional regulator; overlaps another CDS with the same product name.
       0.636
EDZ42413.1
Isochorismatase family protein; [Q] COG1335 Amidases related to nicotinamidase.
  
 
  0.601
EDZ43265.1
Isochorismatase hydrolase; [Q] COG1335 Amidases related to nicotinamidase.
  
 
  0.601
Your Current Organism:
Rhodobacteraceae bacterium HTCC2083
NCBI taxonomy Id: 314270
Other names: R. bacterium HTCC2083, Rhodobacterales bacterium HTCC2083
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