STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDZ41553.1[S] COG4333 Uncharacterized protein conserved in bacteria. (172 aa)    
Predicted Functional Partners:
EDZ40999.1
Conserved hypothetical protein.
       0.817
EDZ42838.1
Conserved hypothetical protein.
  
     0.656
EDZ44296.1
Efflux transporter, RND family, MFP subunit; [V] COG1566 Multidrug resistance efflux pump.
  
     0.565
EDZ40773.1
Conserved hypothetical protein.
       0.553
fabH
3-oxoacyl-(acyl-carrier-protein) synthase III; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched-chain and/or straight-chain of fatty acids; Belongs to the thiolase-like superfamily. FabH family.
   
    0.539
EDZ44542.1
Peptidase A24A, prepilin type IV; [OU] COG4960 Flp pilus assembly protein, protease CpaA.
  
     0.534
EDZ42188.1
Type I secretion target repeat protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
       0.524
rpsO
Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.
       0.474
EDZ42036.1
[M] COG1596 Periplasmic protein involved in polysaccharide export.
  
     0.440
EDZ40769.1
Caax amino terminal protease family protein; [R] COG1266 Predicted metal-dependent membrane protease.
  
     0.417
Your Current Organism:
Rhodobacteraceae bacterium HTCC2083
NCBI taxonomy Id: 314270
Other names: R. bacterium HTCC2083, Rhodobacterales bacterium HTCC2083
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