STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDZ41564.1[S] COG4625 Uncharacterized protein with a C-terminal OMP (outer membrane protein) domain. (227 aa)    
Predicted Functional Partners:
EDZ41884.1
[L] COG2801 Transposase and inactivated derivatives.
       0.529
EDZ43114.1
Hypothetical protein.
       0.480
EDZ42003.1
Hypothetical protein.
  
 
 0.444
EDZ42396.1
Type I secretion target repeat protein.
  
 
 0.444
EDZ43572.1
Conserved hypothetical protein.
  
 
 0.444
EDZ43649.1
PTS system IIA component, Man family; [G] COG2893 Phosphotransferase system, mannose/fructose-specific component IIA.
   
    0.403
Your Current Organism:
Rhodobacteraceae bacterium HTCC2083
NCBI taxonomy Id: 314270
Other names: R. bacterium HTCC2083, Rhodobacterales bacterium HTCC2083
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