STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDZ41581.1ABC spermidine/putrescine transporter, inner membrane subunit; [P] COG1178 ABC-type Fe3+ transport system, permease component. (278 aa)    
Predicted Functional Partners:
EDZ41327.1
ABC spermidine/putrescine transporter, inner membrane subunit; [P] COG1178 ABC-type Fe3+ transport system, permease component.
 
 0.984
EDZ43799.1
[E] COG0687 Spermidine/putrescine-binding periplasmic protein.
 
 
 0.983
EDZ41498.1
Ferric cations import ATP-binding protein FbpC 1; [G] COG3839 ABC-type sugar transport systems, ATPase components; Belongs to the ABC transporter superfamily.
 
 
 0.957
EDZ43516.1
[E] COG4126 Hydantoin racemase.
 
     0.914
potD
Spermidine/putrescine ABC transporter, periplasmic substrate-binding protein; Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family.
 
 0.903
EDZ41323.1
Spermidine/putrescine ABC transporter, permease protein; [G] COG1175 ABC-type sugar transport systems, permease components.
 
 0.869
potF
Putrescine ABC transporter, periplasmic putrescine-binding protein; Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family.
 
 0.862
EDZ41789.1
Opine/polyamine ABC transporter, permease protein; [P] COG1178 ABC-type Fe3+ transport system, permease component.
 
 0.861
potB
[E] COG1176 ABC-type spermidine/putrescine transport system, permease component I.
 
 0.844
EDZ43002.1
Binding-protein-dependent transport systems inner membrane component; [P] COG1178 ABC-type Fe3+ transport system, permease component.
 
 0.822
Your Current Organism:
Rhodobacteraceae bacterium HTCC2083
NCBI taxonomy Id: 314270
Other names: R. bacterium HTCC2083, Rhodobacterales bacterium HTCC2083
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