STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDZ41605.1Trap dicarboxylate transporter, dctq subunit. (281 aa)    
Predicted Functional Partners:
EDZ43481.1
[Q] COG4664 TRAP-type mannitol/chloroaromatic compound transport system, large permease component.
 
  0.973
EDZ41058.1
Twin-arginine translocation pathway signal; [G] COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component.
 
    0.899
EDZ44550.1
Acetate operon repressor, putative; [K] COG1414 Transcriptional regulator.
 
     0.879
EDZ42021.1
Trap dicarboxylate transporter, dctm subunit; [C] COG3069 C4-dicarboxylate transporter.
  
  0.736
EDZ43337.1
Trap dicarboxylate transporter, dctp subunit; [G] COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component.
  
    0.698
EDZ41517.1
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.542
EDZ41656.1
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.542
EDZ41828.1
Trap dicarboxylate transporter- dctm subunit; [G] COG1593 TRAP-type C4-dicarboxylate transport system, large permease component.
   
  0.541
EDZ41890.1
Trap dicarboxylate transporter- dctm subunit; [R] COG4666 TRAP-type uncharacterized transport system, fused permease components.
   
  0.541
EDZ42136.1
Trap dicarboxylate transporter- dctm subunit; [R] COG4666 TRAP-type uncharacterized transport system, fused permease components.
   
  0.541
Your Current Organism:
Rhodobacteraceae bacterium HTCC2083
NCBI taxonomy Id: 314270
Other names: R. bacterium HTCC2083, Rhodobacterales bacterium HTCC2083
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