STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDZ40614.1Oxidoreductase, Gfo/Idh/MocA family; [R] COG0673 Predicted dehydrogenases and related proteins. (318 aa)    
Predicted Functional Partners:
iolD
[GHR] COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes; Belongs to the TPP enzyme family.
 
  
 0.766
EDZ42908.1
Myo-inositol catabolism IolB protein; [G] COG3718 Uncharacterized enzyme involved in inositol metabolism.
 
  
 0.689
EDZ43848.1
Oxidoreductase domain protein; [R] COG0673 Predicted dehydrogenases and related proteins.
  
  
  0.685
EDZ42592.1
Iole protein; [G] COG1082 Sugar phosphate isomerases/epimerases.
  
 
  0.595
EDZ43325.1
Iole protein; [G] COG1082 Sugar phosphate isomerases/epimerases.
  
 
  0.595
rpoH
Alternative sigma factor RpoH; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in regulation of expression of heat shock genes.
       0.592
EDZ44127.1
AP endonuclease, family 2; [G] COG1082 Sugar phosphate isomerases/epimerases.
  
 
  0.591
EDZ44376.1
Oxidoreductase; [R] COG0673 Predicted dehydrogenases and related proteins; overlaps another CDS with the same product name.
  
     0.534
EDZ41562.1
DegT/DnrJ/EryC1/StrS aminotransferase family; [M] COG0399 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; Belongs to the DegT/DnrJ/EryC1 family.
 
 
 0.528
EDZ40672.1
Aminotransferase, DegT/DnrJ/EryC1/StrS family; [M] COG0399 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; Belongs to the DegT/DnrJ/EryC1 family.
  
 
 0.528
Your Current Organism:
Rhodobacteraceae bacterium HTCC2083
NCBI taxonomy Id: 314270
Other names: R. bacterium HTCC2083, Rhodobacterales bacterium HTCC2083
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