STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
soxB_1Sulfur oxidation B protein; [F] COG0737 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases; Belongs to the 5'-nucleotidase family. (565 aa)    
Predicted Functional Partners:
soxZ
Sulfur oxidation Z protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
 
 
 0.996
soxY
Sulfur oxidation Y protein; [S] COG5501 Predicted secreted protein.
 
 
 0.995
soxC
Sulfite dehydrogenase SoxC protein; [R] COG2041 Sulfite oxidase and related enzymes.
 
  
 0.989
EDZ44055.1
Cytochrome c, class I; [C] COG3474 Cytochrome c2.
 
  
 0.988
soxA
Diheme Cytochrome c SoxA; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
 
  
 0.983
EDZ41611.1
Conserved hypothetical protein.
    
 0.906
soxF
Sulfide dehydrogenase flavoprotein chain; [R] COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases.
 
   
 0.901
soxE
[C] COG2863 Cytochrome c553.
 
  
 0.863
EDZ41353.1
YeeE/YedE family protein; [R] COG2391 Predicted transporter component.
 
     0.846
EDZ41620.1
Molybdopterin oxidoreductase Fe4S4 domain family; [C] COG5013 Nitrate reductase alpha subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
    
 0.816
Your Current Organism:
Rhodobacteraceae bacterium HTCC2083
NCBI taxonomy Id: 314270
Other names: R. bacterium HTCC2083, Rhodobacterales bacterium HTCC2083
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