Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EDZ40905.1 | EDZ41212.1 | RB2083_419 | RB2083_726 | [T] COG2200 FOG: EAL domain. | Diguanylate cyclase; [T] COG2199 FOG: GGDEF domain. | 0.988 |
EDZ40905.1 | EDZ41741.1 | RB2083_419 | RB2083_1256 | [T] COG2200 FOG: EAL domain. | Hpt protein. | 0.892 |
EDZ40905.1 | EDZ41856.1 | RB2083_419 | RB2083_1371 | [T] COG2200 FOG: EAL domain. | Heme NO binding domain protein. | 0.908 |
EDZ40905.1 | EDZ42402.1 | RB2083_419 | RB2083_1917 | [T] COG2200 FOG: EAL domain. | Anti-sigma-factor antagonist; [T] COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor); Belongs to the anti-sigma-factor antagonist family. | 0.917 |
EDZ40905.1 | EDZ42768.1 | RB2083_419 | RB2083_2283 | [T] COG2200 FOG: EAL domain. | Aerobic respiration control sensor protein ArcB, putative; [T] COG0642 Signal transduction histidine kinase. | 0.999 |
EDZ40905.1 | EDZ42781.1 | RB2083_419 | RB2083_2296 | [T] COG2200 FOG: EAL domain. | Serine-protein kinase, putative. | 0.948 |
EDZ40905.1 | EDZ43466.1 | RB2083_419 | RB2083_2981 | [T] COG2200 FOG: EAL domain. | Response regulator; [LKJ] COG0513 Superfamily II DNA and RNA helicases. | 0.973 |
EDZ40905.1 | EDZ43828.1 | RB2083_419 | RB2083_3343 | [T] COG2200 FOG: EAL domain. | Sensor protein GacS; [T] COG0642 Signal transduction histidine kinase. | 0.999 |
EDZ40905.1 | flgB_2 | RB2083_419 | RB2083_653 | [T] COG2200 FOG: EAL domain. | [N] COG1815 Flagellar basal body protein. | 0.833 |
EDZ41212.1 | EDZ40905.1 | RB2083_726 | RB2083_419 | Diguanylate cyclase; [T] COG2199 FOG: GGDEF domain. | [T] COG2200 FOG: EAL domain. | 0.988 |
EDZ41212.1 | EDZ41741.1 | RB2083_726 | RB2083_1256 | Diguanylate cyclase; [T] COG2199 FOG: GGDEF domain. | Hpt protein. | 0.590 |
EDZ41212.1 | EDZ41856.1 | RB2083_726 | RB2083_1371 | Diguanylate cyclase; [T] COG2199 FOG: GGDEF domain. | Heme NO binding domain protein. | 0.992 |
EDZ41212.1 | EDZ42402.1 | RB2083_726 | RB2083_1917 | Diguanylate cyclase; [T] COG2199 FOG: GGDEF domain. | Anti-sigma-factor antagonist; [T] COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor); Belongs to the anti-sigma-factor antagonist family. | 0.844 |
EDZ41212.1 | EDZ42768.1 | RB2083_726 | RB2083_2283 | Diguanylate cyclase; [T] COG2199 FOG: GGDEF domain. | Aerobic respiration control sensor protein ArcB, putative; [T] COG0642 Signal transduction histidine kinase. | 0.996 |
EDZ41212.1 | EDZ42781.1 | RB2083_726 | RB2083_2296 | Diguanylate cyclase; [T] COG2199 FOG: GGDEF domain. | Serine-protein kinase, putative. | 0.907 |
EDZ41212.1 | EDZ43466.1 | RB2083_726 | RB2083_2981 | Diguanylate cyclase; [T] COG2199 FOG: GGDEF domain. | Response regulator; [LKJ] COG0513 Superfamily II DNA and RNA helicases. | 0.929 |
EDZ41212.1 | EDZ43828.1 | RB2083_726 | RB2083_3343 | Diguanylate cyclase; [T] COG2199 FOG: GGDEF domain. | Sensor protein GacS; [T] COG0642 Signal transduction histidine kinase. | 0.994 |
EDZ41212.1 | flgB_2 | RB2083_726 | RB2083_653 | Diguanylate cyclase; [T] COG2199 FOG: GGDEF domain. | [N] COG1815 Flagellar basal body protein. | 0.785 |
EDZ41741.1 | EDZ40905.1 | RB2083_1256 | RB2083_419 | Hpt protein. | [T] COG2200 FOG: EAL domain. | 0.892 |
EDZ41741.1 | EDZ41212.1 | RB2083_1256 | RB2083_726 | Hpt protein. | Diguanylate cyclase; [T] COG2199 FOG: GGDEF domain. | 0.590 |
page 1 of 5