STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDZ41976.1Hypothetical protein. (355 aa)    
Predicted Functional Partners:
EDZ42400.1
Glycosyl transferase, group 2 family protein; [M] COG0463 Glycosyltransferases involved in cell wall biogenesis.
       0.675
EDZ43489.1
[M] COG2089 Sialic acid synthase.
       0.675
EDZ44000.1
Putative acyltransferase domain protein; [I] COG1835 Predicted acyltransferases.
       0.610
galM
[N] COG1360 Flagellar motor protein.
  
 
 0.529
EDZ42753.1
[G] COG3345 Alpha-galactosidase.
    
 0.492
EDZ43279.1
Oligo-1,6-glucosidase; [G] COG0366 Glycosidases.
    
 0.487
EDZ44146.1
Polysaccharide biosynthesis protein CapD; [MG] COG0451 Nucleoside-diphosphate-sugar epimerases.
       0.480
EDZ44283.1
Beta-galactosidase; [G] COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase.
  
 
 0.477
EDZ44023.1
Rb145.
 
  
 0.430
xylA
Xylose isomerase; [H] COG0414 Panthothenate synthetase; Belongs to the xylose isomerase family.
    
 0.421
Your Current Organism:
Rhodobacteraceae bacterium HTCC2083
NCBI taxonomy Id: 314270
Other names: R. bacterium HTCC2083, Rhodobacterales bacterium HTCC2083
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