STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amt_1Ammonium transporter; [P] COG0004 Ammonia permease. (440 aa)    
Predicted Functional Partners:
EDZ42793.1
[E] COG0347 Nitrogen regulatory protein PII; Belongs to the P(II) protein family.
 0.999
EDZ41440.1
Nitrogen regulatory protein P-II; [J] COG0223 Methionyl-tRNA formyltransferase; Belongs to the P(II) protein family.
 0.998
EDZ42849.1
[E] COG0347 Nitrogen regulatory protein PII.
  
 0.965
EDZ41396.1
Hypothetical protein; [C] COG2218 Formylmethanofuran dehydrogenase subunit C; Conserved region in glutamate synthase family.
 
  
 0.914
EDZ43231.1
[T] COG2200 FOG: EAL domain.
     0.894
EDZ40905.1
[T] COG2200 FOG: EAL domain.
      0.880
EDZ42768.1
Aerobic respiration control sensor protein ArcB, putative; [T] COG0642 Signal transduction histidine kinase.
 
 0.866
glnL
Nitrogen regulation protein NR(II); [T] COG0642 Signal transduction histidine kinase.
  
 
 0.754
gacS
Sensor protein GacS; [T] COG0642 Signal transduction histidine kinase.
 
  
 0.723
EDZ43828.1
Sensor protein GacS; [T] COG0642 Signal transduction histidine kinase.
  
 0.710
Your Current Organism:
Rhodobacteraceae bacterium HTCC2083
NCBI taxonomy Id: 314270
Other names: R. bacterium HTCC2083, Rhodobacterales bacterium HTCC2083
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