STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDZ42021.1Trap dicarboxylate transporter, dctm subunit; [C] COG3069 C4-dicarboxylate transporter. (442 aa)    
Predicted Functional Partners:
EDZ41568.1
Trap dicarboxylate transporter, dctq subunit; [G] COG3090 TRAP-type C4-dicarboxylate transport system, small permease component.
 
 0.973
EDZ43337.1
Trap dicarboxylate transporter, dctp subunit; [G] COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component.
 
    0.891
dctP
Trap-t family transporter, dctp subunit; [Q] COG4663 TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component.
 
    0.810
EDZ40927.1
Trap dicarboxylate transporter, dctp subunit; [G] COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component.
 
    0.804
EDZ42386.1
Tripartite ATP-independent periplasmic transporter, DctQ component; [G] COG3090 TRAP-type C4-dicarboxylate transport system, small permease component.
  
  0.775
EDZ41387.1
Trap dicarboxylate transporter- dctp subunit; [Q] COG4663 TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component.
 
    0.745
EDZ41605.1
Trap dicarboxylate transporter, dctq subunit.
  
  0.736
EDZ42144.1
Tripartite ATP-independent periplasmic transporter, DctQ component; [G] COG3090 TRAP-type C4-dicarboxylate transport system, small permease component.
  
 0.717
EDZ41190.1
Putative trap family c4-dicarboxylate transmembrane transporter; [G] COG3090 TRAP-type C4-dicarboxylate transport system, small permease component.
 
  0.665
EDZ44040.1
Zinc-containing alcohol dehydrogenase superfamily; [ER] COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases.
 
  
  0.612
Your Current Organism:
Rhodobacteraceae bacterium HTCC2083
NCBI taxonomy Id: 314270
Other names: R. bacterium HTCC2083, Rhodobacterales bacterium HTCC2083
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