STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDZ42036.1[M] COG1596 Periplasmic protein involved in polysaccharide export. (373 aa)    
Predicted Functional Partners:
kpsC
[M] COG3563 Capsule polysaccharide export protein.
 
  
 0.995
EDZ42661.1
Lipopolysaccharide biosynthesis; [M] COG3206 Uncharacterized protein involved in exopolysaccharide biosynthesis.
  
 0.988
EDZ42311.1
Chain length determinant protein; [M] COG3524 Capsule polysaccharide export protein.
 
  
 0.985
kpsT
Capsular polysaccharide export ATP-binding protein; [V] COG1131 ABC-type multidrug transport system, ATPase component.
 
  
 0.984
EDZ44426.1
ABC transporter, permease protein; [GM] COG1682 ABC-type polysaccharide/polyol phosphate export systems, permease component.
 
  
 0.961
kpsS
[M] COG3562 Capsule polysaccharide export protein.
 
   
 0.925
wcaG
Nucleotide sugar epimerase/dehydratase; [M] COG1088 dTDP-D-glucose 4,6-dehydratase.
  
 
 0.894
EDZ44146.1
Polysaccharide biosynthesis protein CapD; [MG] COG0451 Nucleoside-diphosphate-sugar epimerases.
  
 
 0.894
EDZ44609.1
ABC transporter permease protein; [GM] COG1682 ABC-type polysaccharide/polyol phosphate export systems, permease component.
  
  
 0.892
EDZ41804.1
Exopolysaccharide biosynthesis domain protein; [D] COG0489 ATPases involved in chromosome partitioning.
  
 0.888
Your Current Organism:
Rhodobacteraceae bacterium HTCC2083
NCBI taxonomy Id: 314270
Other names: R. bacterium HTCC2083, Rhodobacterales bacterium HTCC2083
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.