STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDZ42104.1Ferredoxin; [R] COG3894 Uncharacterized metal-binding protein. (681 aa)    
Predicted Functional Partners:
EDZ42944.1
Dihydropteroate synthase (dhps); [E] COG1410 Methionine synthase I, cobalamin-binding domain.
 
 
 
 0.906
EDZ42325.1
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
 
   
 0.878
EDZ44027.1
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
 
     0.847
EDZ43156.1
Methionine synthase I; [E] COG2040 Homocysteine/selenocysteine methylase (S-methylmethionine-dependent).
 
 
 
 0.828
EDZ43807.1
5-methyltetrahydrofolate--homocysteine S-methyltransferase; [I] COG2185 Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding).
 
    0.817
EDZ41970.1
Trimethylamine methyltransferase family protein; [S] COG1385 Uncharacterized protein conserved in bacteria; Belongs to the trimethylamine methyltransferase family.
 
     0.782
EDZ42629.1
Trimethylamine methyltransferase; [J] COG0292 Ribosomal protein L20; Belongs to the trimethylamine methyltransferase family.
 
     0.781
RB2083_81
Trimethylamine methyltransferase family protein; [S] COG1385 Uncharacterized protein conserved in bacteria; Belongs to the trimethylamine methyltransferase family.
 
     0.775
metF_2
[E] COG0685 5,10-methylenetetrahydrofolate reductase.
 
     0.689
EDZ41471.1
Hypothetical protein.
       0.645
Your Current Organism:
Rhodobacteraceae bacterium HTCC2083
NCBI taxonomy Id: 314270
Other names: R. bacterium HTCC2083, Rhodobacterales bacterium HTCC2083
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.