STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vgrGVgrG protein; [S] COG3501 Uncharacterized protein conserved in bacteria. (638 aa)    
Predicted Functional Partners:
EDZ42512.1
Type VI secretion protein, VC_A0107 family; [S] COG3516 Uncharacterized protein conserved in bacteria.
 
  
 0.986
EDZ40758.1
[S] COG3515 Uncharacterized protein conserved in bacteria.
 
  
 0.983
EDZ40619.1
Hypothetical protein.
  
 
 0.938
EDZ41451.1
Type IV / VI secretion system protein, DotU family; [S] COG3455 Uncharacterized protein conserved in bacteria.
 
  
 0.938
EDZ43154.1
Paar; [S] COG4104 Uncharacterized conserved protein.
 
   
 0.930
EDZ42250.1
Type VI secretion protein, EvpB/VC_A0108 family; [S] COG3517 Uncharacterized protein conserved in bacteria.
 
  
 0.915
EDZ42922.1
[S] COG3517 Uncharacterized protein conserved in bacteria.
 
  
 0.913
vasA
Type VI secretion protein, VC_A0110 family; [S] COG3519 Uncharacterized protein conserved in bacteria.
 
  
 0.899
EDZ41790.1
[S] COG3523 Uncharacterized protein conserved in bacteria.
 
  
 0.894
clpV
Type VI secretion ATPase, ClpV1 family; [O] COG0542 ATPases with chaperone activity, ATP-binding subunit; Belongs to the ClpA/ClpB family.
 
  
 0.893
Your Current Organism:
Rhodobacteraceae bacterium HTCC2083
NCBI taxonomy Id: 314270
Other names: R. bacterium HTCC2083, Rhodobacterales bacterium HTCC2083
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