EDZ42112.1 protein (Rhodobacteraceae bacterium HTCC2083)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

EDZ42112.1

Flagellar rod assembly protein/muramidase FlgJ, putative; [MNO] COG3951 Rod binding protein. (108 aa)

Predicted Functional Partners:

EDZ42735.1

0.997

flgL

0.990

EDZ41375.1

0.990

flgH_1

0.987

flgB_1

0.987

flgI_1

0.986

fliL

0.986

fliM

0.985

flgE

0.985

fliF

0.984

Your Current Organism:

Rhodobacteraceae bacterium HTCC2083

NCBI taxonomy Id: 314270
Other names: R. bacterium HTCC2083, Rhodobacterales bacterium HTCC2083

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EDZ41375.1	EDZ42112.1	RB2083_889	RB2083_1627	Flagellar proximal rod protein FlgF; [N] COG1749 Flagellar hook protein FlgE.	Flagellar rod assembly protein/muramidase FlgJ, putative; [MNO] COG3951 Rod binding protein.	0.990
EDZ41375.1	EDZ42735.1	RB2083_889	RB2083_2250	Flagellar proximal rod protein FlgF; [N] COG1749 Flagellar hook protein FlgE.	FlgK flagellar hook-associated protein 1, putative; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit; Belongs to the flagella basal body rod proteins family.	0.992
EDZ41375.1	flgB_1	RB2083_889	RB2083_4117	Flagellar proximal rod protein FlgF; [N] COG1749 Flagellar hook protein FlgE.	Flagellar basal-body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.	0.998
EDZ41375.1	flgE	RB2083_889	RB2083_3148	Flagellar proximal rod protein FlgF; [N] COG1749 Flagellar hook protein FlgE.	[N] COG1749 Flagellar hook protein FlgE.	0.999
EDZ41375.1	flgH_1	RB2083_889	RB2083_2826	Flagellar proximal rod protein FlgF; [N] COG1749 Flagellar hook protein FlgE.	Flagellar L-ring protein FlgH; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.	0.997
EDZ41375.1	flgI_1	RB2083_889	RB2083_1201	Flagellar proximal rod protein FlgF; [N] COG1749 Flagellar hook protein FlgE.	Flagellar P-ring protein FlgI; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.	0.996
EDZ41375.1	flgL	RB2083_889	RB2083_437	Flagellar proximal rod protein FlgF; [N] COG1749 Flagellar hook protein FlgE.	[N] COG1344 Flagellin and related hook-associated proteins.	0.990
EDZ41375.1	fliF	RB2083_889	RB2083_2372	Flagellar proximal rod protein FlgF; [N] COG1749 Flagellar hook protein FlgE.	Flagellar M-ring protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family.	0.996
EDZ41375.1	fliL	RB2083_889	RB2083_4005	Flagellar proximal rod protein FlgF; [N] COG1749 Flagellar hook protein FlgE.	Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.	0.972
EDZ41375.1	fliM	RB2083_889	RB2083_2009	Flagellar proximal rod protein FlgF; [N] COG1749 Flagellar hook protein FlgE.	[N] COG1868 Flagellar motor switch protein.	0.986
EDZ42112.1	EDZ41375.1	RB2083_1627	RB2083_889	Flagellar rod assembly protein/muramidase FlgJ, putative; [MNO] COG3951 Rod binding protein.	Flagellar proximal rod protein FlgF; [N] COG1749 Flagellar hook protein FlgE.	0.990
EDZ42112.1	EDZ42735.1	RB2083_1627	RB2083_2250	Flagellar rod assembly protein/muramidase FlgJ, putative; [MNO] COG3951 Rod binding protein.	FlgK flagellar hook-associated protein 1, putative; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit; Belongs to the flagella basal body rod proteins family.	0.997
EDZ42112.1	flgB_1	RB2083_1627	RB2083_4117	Flagellar rod assembly protein/muramidase FlgJ, putative; [MNO] COG3951 Rod binding protein.	Flagellar basal-body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.	0.987
EDZ42112.1	flgE	RB2083_1627	RB2083_3148	Flagellar rod assembly protein/muramidase FlgJ, putative; [MNO] COG3951 Rod binding protein.	[N] COG1749 Flagellar hook protein FlgE.	0.985
EDZ42112.1	flgH_1	RB2083_1627	RB2083_2826	Flagellar rod assembly protein/muramidase FlgJ, putative; [MNO] COG3951 Rod binding protein.	Flagellar L-ring protein FlgH; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.	0.987
EDZ42112.1	flgI_1	RB2083_1627	RB2083_1201	Flagellar rod assembly protein/muramidase FlgJ, putative; [MNO] COG3951 Rod binding protein.	Flagellar P-ring protein FlgI; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.	0.986
EDZ42112.1	flgL	RB2083_1627	RB2083_437	Flagellar rod assembly protein/muramidase FlgJ, putative; [MNO] COG3951 Rod binding protein.	[N] COG1344 Flagellin and related hook-associated proteins.	0.990
EDZ42112.1	fliF	RB2083_1627	RB2083_2372	Flagellar rod assembly protein/muramidase FlgJ, putative; [MNO] COG3951 Rod binding protein.	Flagellar M-ring protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family.	0.984
EDZ42112.1	fliL	RB2083_1627	RB2083_4005	Flagellar rod assembly protein/muramidase FlgJ, putative; [MNO] COG3951 Rod binding protein.	Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.	0.986
EDZ42112.1	fliM	RB2083_1627	RB2083_2009	Flagellar rod assembly protein/muramidase FlgJ, putative; [MNO] COG3951 Rod binding protein.	[N] COG1868 Flagellar motor switch protein.	0.985