EDZ42225.1 protein (Rhodobacteraceae bacterium HTCC2083)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

EDZ42225.1

Conserved hypothetical protein; [OC] COG4233 Uncharacterized protein predicted to be involved in C-type cytochrome biogenesis. (269 aa)

Predicted Functional Partners:

EDZ41234.1

0.702

EDZ43340.1

0.469

EDZ41238.1

0.461

EDZ42156.1

0.427

EDZ42960.1

0.423

EDZ44206.1

0.403

Your Current Organism:

Rhodobacteraceae bacterium HTCC2083

NCBI taxonomy Id: 314270
Other names: R. bacterium HTCC2083, Rhodobacterales bacterium HTCC2083

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EDZ41234.1	EDZ42225.1	RB2083_748	RB2083_1740	Conserved hypothetical protein; [K] COG1678 Putative transcriptional regulator; Belongs to the UPF0301 (AlgH) family.	Conserved hypothetical protein; [OC] COG4233 Uncharacterized protein predicted to be involved in C-type cytochrome biogenesis.	0.702
EDZ41238.1	EDZ42156.1	RB2083_752	RB2083_1671	[L] COG1466 DNA polymerase III, delta subunit.	Conserved hypothetical protein TIGR02302; [M] COG0739 Membrane proteins related to metalloendopeptidases.	0.669
EDZ41238.1	EDZ42225.1	RB2083_752	RB2083_1740	[L] COG1466 DNA polymerase III, delta subunit.	Conserved hypothetical protein; [OC] COG4233 Uncharacterized protein predicted to be involved in C-type cytochrome biogenesis.	0.461
EDZ42156.1	EDZ41238.1	RB2083_1671	RB2083_752	Conserved hypothetical protein TIGR02302; [M] COG0739 Membrane proteins related to metalloendopeptidases.	[L] COG1466 DNA polymerase III, delta subunit.	0.669
EDZ42156.1	EDZ42225.1	RB2083_1671	RB2083_1740	Conserved hypothetical protein TIGR02302; [M] COG0739 Membrane proteins related to metalloendopeptidases.	Conserved hypothetical protein; [OC] COG4233 Uncharacterized protein predicted to be involved in C-type cytochrome biogenesis.	0.427
EDZ42225.1	EDZ41234.1	RB2083_1740	RB2083_748	Conserved hypothetical protein; [OC] COG4233 Uncharacterized protein predicted to be involved in C-type cytochrome biogenesis.	Conserved hypothetical protein; [K] COG1678 Putative transcriptional regulator; Belongs to the UPF0301 (AlgH) family.	0.702
EDZ42225.1	EDZ41238.1	RB2083_1740	RB2083_752	Conserved hypothetical protein; [OC] COG4233 Uncharacterized protein predicted to be involved in C-type cytochrome biogenesis.	[L] COG1466 DNA polymerase III, delta subunit.	0.461
EDZ42225.1	EDZ42156.1	RB2083_1740	RB2083_1671	Conserved hypothetical protein; [OC] COG4233 Uncharacterized protein predicted to be involved in C-type cytochrome biogenesis.	Conserved hypothetical protein TIGR02302; [M] COG0739 Membrane proteins related to metalloendopeptidases.	0.427
EDZ42225.1	EDZ42960.1	RB2083_1740	RB2083_2475	Conserved hypothetical protein; [OC] COG4233 Uncharacterized protein predicted to be involved in C-type cytochrome biogenesis.	Transcriptional regulator, XRE family; [K] COG1396 Predicted transcriptional regulators.	0.423
EDZ42225.1	EDZ43340.1	RB2083_1740	RB2083_2855	Conserved hypothetical protein; [OC] COG4233 Uncharacterized protein predicted to be involved in C-type cytochrome biogenesis.	Transcriptional regulator, XRE family; [K] COG1396 Predicted transcriptional regulators.	0.469
EDZ42225.1	EDZ44206.1	RB2083_1740	RB2083_3721	Conserved hypothetical protein; [OC] COG4233 Uncharacterized protein predicted to be involved in C-type cytochrome biogenesis.	Heat shock protein Hsp20; [O] COG0071 Molecular chaperone (small heat shock protein); Belongs to the small heat shock protein (HSP20) family.	0.403
EDZ42960.1	EDZ42225.1	RB2083_2475	RB2083_1740	Transcriptional regulator, XRE family; [K] COG1396 Predicted transcriptional regulators.	Conserved hypothetical protein; [OC] COG4233 Uncharacterized protein predicted to be involved in C-type cytochrome biogenesis.	0.423
EDZ43340.1	EDZ42225.1	RB2083_2855	RB2083_1740	Transcriptional regulator, XRE family; [K] COG1396 Predicted transcriptional regulators.	Conserved hypothetical protein; [OC] COG4233 Uncharacterized protein predicted to be involved in C-type cytochrome biogenesis.	0.469
EDZ44206.1	EDZ42225.1	RB2083_3721	RB2083_1740	Heat shock protein Hsp20; [O] COG0071 Molecular chaperone (small heat shock protein); Belongs to the small heat shock protein (HSP20) family.	Conserved hypothetical protein; [OC] COG4233 Uncharacterized protein predicted to be involved in C-type cytochrome biogenesis.	0.403