STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDZ42274.1LmbE family protein; [S] COG2120 Uncharacterized proteins, LmbE homologs. (245 aa)    
Predicted Functional Partners:
ligK
4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase; [H] COG0684 Demethylmenaquinone methyltransferase.
  
 0.997
fldA
FldA protein; [S] COG2828 Uncharacterized protein conserved in bacteria.
 
  
 0.992
EDZ42614.1
Amidohydrolase 2; [R] COG3618 Predicted metal-dependent hydrolase of the TIM-barrel fold.
 
     0.887
EDZ43306.1
Transcriptional regulator, LysR family; [K] COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
 
     0.868
EDZ43602.1
Cytochrome P450-pinF2, plant-inducible; [Q] COG2124 Cytochrome P450.
       0.773
EDZ41253.1
Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; [M] COG0836 Mannose-1-phosphate guanylyltransferase; Belongs to the mannose-6-phosphate isomerase type 2 family.
     
 0.735
gcvT_2
[E] COG0404 Glycine cleavage system T protein (aminomethyltransferase); Belongs to the GcvT family.
  
     0.675
EDZ42137.1
TRAP transporter, DctQ-like membrane protein; [G] COG3090 TRAP-type C4-dicarboxylate transport system, small permease component.
  
     0.637
pgl
6-phosphogluconolactonase; Hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate.
    
 0.587
EDZ43793.1
Trap dicarboxylate transporter- dctp subunit; [G] COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component.
  
     0.567
Your Current Organism:
Rhodobacteraceae bacterium HTCC2083
NCBI taxonomy Id: 314270
Other names: R. bacterium HTCC2083, Rhodobacterales bacterium HTCC2083
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