STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
soxD_2[E] COG4311 Sarcosine oxidase delta subunit. (90 aa)    
Predicted Functional Partners:
EDZ41083.1
Sarcosine oxidase, alpha subunit family; [E] COG0404 Glycine cleavage system T protein (aminomethyltransferase); Belongs to the GcvT family.
 
 0.999
EDZ42222.1
Sarcosine oxidase, alpha subunit family; [E] COG0404 Glycine cleavage system T protein (aminomethyltransferase); Belongs to the GcvT family.
 
 0.997
RB2083_99
[E] COG0404 Glycine cleavage system T protein (aminomethyltransferase); Belongs to the GcvT family.
 
 0.997
EDZ42496.1
[E] COG4583 Sarcosine oxidase gamma subunit.
 
 0.996
EDZ42458.1
[E] COG0404 Glycine cleavage system T protein (aminomethyltransferase); Belongs to the GcvT family.
 
 0.983
EDZ44260.1
[E] COG0404 Glycine cleavage system T protein (aminomethyltransferase); Belongs to the GcvT family.
 
 0.982
EDZ41489.1
[E] COG4583 Sarcosine oxidase gamma subunit.
 
 0.981
EDZ42159.1
Glycine cleavage T-protein (aminomethyl transferase); [E] COG0665 Glycine/D-amino acid oxidases (deaminating); Belongs to the GcvT family.
 
 0.981
EDZ43792.1
Glycine cleavage T-protein (aminomethyl transferase); [E] COG0665 Glycine/D-amino acid oxidases (deaminating); Belongs to the GcvT family.
 
 0.980
EDZ43420.1
Glycine cleavage T-protein (aminomethyl transferase); [E] COG0665 Glycine/D-amino acid oxidases (deaminating); Belongs to the GcvT family.
  
 0.977
Your Current Organism:
Rhodobacteraceae bacterium HTCC2083
NCBI taxonomy Id: 314270
Other names: R. bacterium HTCC2083, Rhodobacterales bacterium HTCC2083
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.