STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDZ42355.1[I] COG1024 Enoyl-CoA hydratase/carnithine racemase; Belongs to the enoyl-CoA hydratase/isomerase family. (266 aa)    
Predicted Functional Partners:
EDZ42999.1
Transcriptional regulator, MarR family; [K] COG1846 Transcriptional regulators.
     0.986
bhbD
[I] COG1250 3-hydroxyacyl-CoA dehydrogenase.
 0.980
EDZ43768.1
[I] COG1960 Acyl-CoA dehydrogenases.
  0.978
badA
Benzoate-coenzyme A ligase; [I] COG0365 Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases.
 
 
  0.965
EDZ43562.1
Oxidoreductase, FAD/FMN-binding family; [C] COG1902 NADH:flavin oxidoreductases, Old Yellow Enzyme family.
 
  
 0.955
EDZ42059.1
Short-chain dehydrogenase/reductase SDR; [IQR] COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
  0.952
EDZ42801.1
Sensor histidine kinase/response regulator; [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.
    
 0.942
EDZ42942.1
Sensory box sensor histidine kinase/response regulator; [T] COG0784 FOG: CheY-like receiver.
    
 0.942
EDZ43110.1
Sensory box sensor histidine kinase/response regulator; [T] COG0642 Signal transduction histidine kinase.
    
 0.942
EDZ44142.1
Multisensor hybrid histidine kinase, putative; [T] COG0642 Signal transduction histidine kinase.
    
 0.942
Your Current Organism:
Rhodobacteraceae bacterium HTCC2083
NCBI taxonomy Id: 314270
Other names: R. bacterium HTCC2083, Rhodobacterales bacterium HTCC2083
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