STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDZ40677.1[GEPR] COG0477 Permeases of the major facilitator superfamily. (457 aa)    
Predicted Functional Partners:
mepA
Peptidoglycan amidase MepA; [M] COG3770 Murein endopeptidase.
      0.943
EDZ41010.1
[S] COG4222 Uncharacterized protein conserved in bacteria.
       0.852
EDZ42761.1
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
       0.744
EDZ43347.1
Transmembrane protein; Involved in the import of queuosine (Q) precursors, required for Q precursor salvage; Belongs to the vitamin uptake transporter (VUT/ECF) (TC 2.A.88) family. Q precursor transporter subfamily.
       0.709
EDZ44011.1
Yggt family protein; [S] COG0762 Predicted integral membrane protein.
       0.632
tdk
[F] COG1435 Thymidine kinase.
    
  0.552
recQ
[LKJ] COG0513 Superfamily II DNA and RNA helicases.
  
    0.481
EDZ41916.1
[J] COG1186 Protein chain release factor B.
       0.453
EDZ44642.1
[S] COG3022 Uncharacterized protein conserved in bacteria; protein RD1_0358; Belongs to the UPF0246 family.
       0.403
Your Current Organism:
Rhodobacteraceae bacterium HTCC2083
NCBI taxonomy Id: 314270
Other names: R. bacterium HTCC2083, Rhodobacterales bacterium HTCC2083
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