STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDZ42654.1YcaO-like family; [S] COG1944 Uncharacterized conserved protein. (439 aa)    
Predicted Functional Partners:
moaD
[H] COG1977 Molybdopterin converting factor, small subunit.
  
 0.958
moaE
[H] COG0314 Molybdopterin converting factor, large subunit.
  
 0.952
EDZ40769.1
Caax amino terminal protease family protein; [R] COG1266 Predicted metal-dependent membrane protease.
  
  
 0.891
nifS
[E] COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes.
   
 0.874
EDZ43378.1
[C] COG0778 Nitroreductase.
 
 
 0.866
EDZ42586.1
[H] COG0352 Thiamine monophosphate synthase.
  
 
 0.863
EDZ43780.1
WD domain/Cytochrome c family protein; [R] COG2319 FOG: WD40 repeat.
  
 0.818
EDZ41955.1
Hypothetical protein.
     
 0.809
trxB
Thioredoxin-disulfide reductase; [ER] COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductases.
  
  
 0.805
EDZ41275.1
Peptidase S16; [O] COG0466 ATP-dependent Lon protease, bacterial type.
    
 0.757
Your Current Organism:
Rhodobacteraceae bacterium HTCC2083
NCBI taxonomy Id: 314270
Other names: R. bacterium HTCC2083, Rhodobacterales bacterium HTCC2083
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