STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDZ42686.1Conserved hypothetical protein; [R] COG0730 Predicted permeases. (257 aa)    
Predicted Functional Partners:
ibd
[I] COG1960 Acyl-CoA dehydrogenases.
       0.514
EDZ40731.1
Conserved hypothetical protein.
  
     0.453
EDZ41689.1
Periplasmic serine protease, DO/DeqQ family; [O] COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain.
    
 
 0.447
EDZ41006.1
Peptidoglycan binding domain protein.
    
 
 0.447
degQ
Protease DegQ; [O] COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain; Belongs to the peptidase S1C family.
    
 
 0.447
EDZ40696.1
Hypothetical protein.
    
 
 0.427
EDZ43580.1
Efflux transporter, RND family, MFP subunit; [M] COG0845 Membrane-fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
     0.415
EDZ44502.1
RND transporter, HAE1/HME family, permease protein; [V] COG0841 Cation/multidrug efflux pump; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
  
     0.412
Your Current Organism:
Rhodobacteraceae bacterium HTCC2083
NCBI taxonomy Id: 314270
Other names: R. bacterium HTCC2083, Rhodobacterales bacterium HTCC2083
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.