STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDZ42718.1AsmA; [U] COG3210 Large exoproteins involved in heme utilization or adhesion. (926 aa)    
Predicted Functional Partners:
EDZ43305.1
Outer membrane porin; [Q] COG2931 RTX toxins and related Ca2+-binding proteins.
  
     0.754
EDZ42235.1
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.675
rimO
MiaB-like tRNA modifying enzyme YliG, TIGR01125; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily.
       0.620
EDZ42049.1
[V] COG1680 Beta-lactamase class C and other penicillin binding proteins.
  
     0.584
EDZ43506.1
Lipoprotein, putative.
  
     0.582
EDZ43356.1
Conserved hypothetical protein.
  
     0.568
EDZ43464.1
[P] COG1275 Tellurite resistance protein and related permeases.
  
     0.492
EDZ41131.1
Hypothetical protein.
       0.455
EDZ43115.1
Sodium:galactoside symporter family protein; [G] COG2211 Na+/melibiose symporter and related transporters.
  
     0.454
EDZ43475.1
Conserved hypothetical protein.
  
     0.449
Your Current Organism:
Rhodobacteraceae bacterium HTCC2083
NCBI taxonomy Id: 314270
Other names: R. bacterium HTCC2083, Rhodobacterales bacterium HTCC2083
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.