STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDZ42762.1[I] COG1960 Acyl-CoA dehydrogenases. (384 aa)    
Predicted Functional Partners:
etfA
[C] COG2025 Electron transfer flavoprotein, alpha subunit.
 0.970
EDZ40875.1
3-hydroxyacyl-CoA dehydrogenase, C-terminal domain family; [I] COG1250 3-hydroxyacyl-CoA dehydrogenase.
  
 0.943
EDZ44103.1
Peroxisomal bifunctional enzyme; [I] COG1250 3-hydroxyacyl-CoA dehydrogenase; Belongs to the enoyl-CoA hydratase/isomerase family.
 
 0.935
yfcX
Fatty oxidation complex, alpha subunit; [I] COG1250 3-hydroxyacyl-CoA dehydrogenase.
 
 0.935
etfB
[C] COG2086 Electron transfer flavoprotein, beta subunit.
 
 
 0.882
EDZ43433.1
CoA-binding; [C] COG1042 Acyl-CoA synthetase (NDP forming).
 
  
  0.879
EDZ43180.1
Phosphotransferase family protein; [R] COG3173 Predicted aminoglycoside phosphotransferase.
 
 0.860
EDZ42391.1
Phosphotransferase family protein; [R] COG3173 Predicted aminoglycoside phosphotransferase.
 
 0.806
lcdH
3-hydroxyacyl-CoA dehydrogenase, NAD-binding; Catalyzes the NAD(+)-dependent oxidation of L-carnitine to 3- dehydrocarnitine.
 
 0.785
EDZ43292.1
carnitinyl-CoA dehydratase; [I] COG1024 Enoyl-CoA hydratase/carnithine racemase; Belongs to the enoyl-CoA hydratase/isomerase family.
  
  0.762
Your Current Organism:
Rhodobacteraceae bacterium HTCC2083
NCBI taxonomy Id: 314270
Other names: R. bacterium HTCC2083, Rhodobacterales bacterium HTCC2083
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