STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDZ42855.1[Q] COG1233 Phytoene dehydrogenase and related proteins. (495 aa)    
Predicted Functional Partners:
crtB
[I] COG1562 Phytoene/squalene synthetase.
 
 0.995
crtC
Hydroxyneurosporene synthase (CrtC).
 
 
 0.991
bchD
Magnesium chelatase ATPase subunit D; Involved in bacteriochlorophyll biosynthesis; introduces a magnesium ion into protoporphyrin IX to yield Mg-protoporphyrin IX.
 
 
 0.935
crtF
[QR] COG0500 SAM-dependent methyltransferases.
 
 
 0.927
EDZ41592.1
Geranylgeranyl reductase; [C] COG0644 Dehydrogenases (flavoproteins).
 
 
 0.891
bchG
Bacteriochlorophyll synthase 33 kDa chain; [H] COG0382 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases.
 
 
 0.885
bchF
2-vinyl bacteriochlorophyllide hydratase.
 
  
 0.862
bchN
Light-independent protochlorophyllide reductase, N subunit; Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein (BchN-BchB) is the catalytic component of the complex.
 
    0.854
bchB
Light-independent protochlorophyllide reductase, B subunit; Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein (BchN-BchB) is the catalytic component of the complex.
  
    0.846
bchC
Chlorophyll synthesis pathway, bchC; [R] COG1064 Zn-dependent alcohol dehydrogenases.
 
  
 0.823
Your Current Organism:
Rhodobacteraceae bacterium HTCC2083
NCBI taxonomy Id: 314270
Other names: R. bacterium HTCC2083, Rhodobacterales bacterium HTCC2083
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