STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDZ42879.1Peptidase, family S49; [OU] COG0616 Periplasmic serine proteases (ClpP class). (265 aa)    
Predicted Functional Partners:
EDZ41731.1
Putative K+-dependent Na+/Ca+ exchanger; [P] COG0530 Ca2+/Na+ antiporter.
       0.659
EDZ41977.1
ABC-2 type transporter; [GM] COG1682 ABC-type polysaccharide/polyol phosphate export systems, permease component.
       0.644
EDZ41466.1
ABC transporter, ATP-binding protein; [V] COG1131 ABC-type multidrug transport system, ATPase component.
  
    0.620
EDZ44609.1
ABC transporter permease protein; [GM] COG1682 ABC-type polysaccharide/polyol phosphate export systems, permease component.
  
     0.592
puhB
Putative photosynthetic co.
   
    0.559
uvrC
Excinuclease ABC, C subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision.
       0.475
EDZ44097.1
Integral membrane protein; [GER] COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily.
       0.431
lgt
Prolipoprotein diacylglyceryl transferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins; Belongs to the Lgt family.
 
   
 0.415
EDZ42156.1
Conserved hypothetical protein TIGR02302; [M] COG0739 Membrane proteins related to metalloendopeptidases.
      
 0.404
kdsD
Arabinose 5-phosphate isomerase; [R] COG0517 FOG: CBS domain; Belongs to the SIS family. GutQ/KpsF subfamily.
     
 0.404
Your Current Organism:
Rhodobacteraceae bacterium HTCC2083
NCBI taxonomy Id: 314270
Other names: R. bacterium HTCC2083, Rhodobacterales bacterium HTCC2083
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