STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nifS[E] COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes. (347 aa)    
Predicted Functional Partners:
EDZ41442.1
Nitrogen-fixing NifU domain protein; [C] COG0822 NifU homolog involved in Fe-S cluster formation.
  
 0.999
EDZ44098.1
Uncharacterized protein family UPF0033; [O] COG0425 Predicted redox protein, regulator of disulfide bond formation; Belongs to the sulfur carrier protein TusA family.
   
 0.994
EDZ41939.1
Transcriptional regulator, BadM/Rrf2 family; [K] COG1959 Predicted transcriptional regulator.
 
 
 0.975
iscA
Iron-sulfur cluster assembly accessory protein; [S] COG0316 Uncharacterized conserved protein; Belongs to the HesB/IscA family.
 
  
 0.960
fdx
[C] COG0633 Ferredoxin.
  
 0.960
EDZ44538.1
Iron-sulfur cluster-binding protein; [C] COG0633 Ferredoxin.
  
 0.960
EDZ42005.1
Reductive dehalogenase subfamily, putative; [C] COG1600 Uncharacterized Fe-S protein.
  
 0.944
EDZ42304.1
Vanillate O-demethylase oxidoreductase; [C] COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1.
  
 0.920
paaK
Phenylacetic acid degradation oxidoreductase PaaK; [C] COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1.
  
 0.920
RB2083_85
Vanillate O-demethylase oxidoreductase; [C] COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1.
  
 0.920
Your Current Organism:
Rhodobacteraceae bacterium HTCC2083
NCBI taxonomy Id: 314270
Other names: R. bacterium HTCC2083, Rhodobacterales bacterium HTCC2083
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