STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDZ42961.1Alkylhydroperoxidase AhpD core; [S] COG0599 Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit. (73 aa)    
Predicted Functional Partners:
EDZ43995.1
[S] COG3220 Uncharacterized protein conserved in bacteria; Belongs to the UPF0276 family.
   
  
 0.767
EDZ43149.1
Conserved hypothetical protein; [S] COG5572 Predicted integral membrane protein.
   
    0.582
EDZ42590.1
Peroxidase; [O] COG1225 Peroxiredoxin.
  
  
 0.560
pheC
Cyclohexadienyl dehydratase; [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; Belongs to the bacterial solute-binding protein 3 family.
 
     0.485
EDZ40908.1
[E] COG0765 ABC-type amino acid transport system, permease component.
 
     0.471
EDZ43695.1
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
   
    0.455
mmsB_1
3-hydroxyisobutyrate dehydrogenase; [I] COG1024 Enoyl-CoA hydratase/carnithine racemase; Belongs to the HIBADH-related family.
  
 
  0.443
purB
Adenylosuccinate lyase; [C] COG0114 Fumarase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
  
 
 0.408
Your Current Organism:
Rhodobacteraceae bacterium HTCC2083
NCBI taxonomy Id: 314270
Other names: R. bacterium HTCC2083, Rhodobacterales bacterium HTCC2083
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.