STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDZ43019.1Mandelate racemase/muconate lactonizing enzyme family protein; [MR] COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily; Belongs to the mandelate racemase/muconate lactonizing enzyme family. (410 aa)    
Predicted Functional Partners:
dgoK
2-dehydro-3-deoxygalactonokinase protein; [G] COG3734 2-keto-3-deoxy-galactonokinase.
 
 0.960
EDZ43588.1
Oxidoreductase, zinc-binding dehydrogenase family; [C] COG1062 Zn-dependent alcohol dehydrogenases, class III.
 
     0.869
EDZ42312.1
[ER] COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases.
 
     0.816
uxaA
[G] COG2721 Altronate dehydratase.
    
 0.697
EDZ42949.1
Tetracycline resistance protein; [GEPR] COG0477 Permeases of the major facilitator superfamily.
       0.642
EDZ43652.1
[I] COG3239 Fatty acid desaturase.
 
     0.604
uxuA
Mannonate dehydratase; Catalyzes the dehydration of D-mannonate.
    
 0.585
EDZ43348.1
Amidohydrolase 2; [R] COG3618 Predicted metal-dependent hydrolase of the TIM-barrel fold.
 
  
 0.582
EDZ42579.1
[G] COG0800 2-keto-3-deoxy-6-phosphogluconate aldolase.
  
 0.578
kdgK
2-dehydro-3-deoxygluconokinase; [G] COG0524 Sugar kinases, ribokinase family.
    
  0.558
Your Current Organism:
Rhodobacteraceae bacterium HTCC2083
NCBI taxonomy Id: 314270
Other names: R. bacterium HTCC2083, Rhodobacterales bacterium HTCC2083
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