Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EDZ43034.1 | EDZ43569.1 | RB2083_2549 | RB2083_3084 | Hypothetical protein. | Transporter; [S] COG3602 Uncharacterized protein conserved in bacteria. | 0.424 |
EDZ43034.1 | EDZ43597.1 | RB2083_2549 | RB2083_3112 | Hypothetical protein. | UvrD/REP helicase domain protein; [L] COG0210 Superfamily I DNA and RNA helicases. | 0.412 |
EDZ43034.1 | EDZ44143.1 | RB2083_2549 | RB2083_3658 | Hypothetical protein. | Hemolysin-type calcium-binding region; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit. | 0.762 |
EDZ43569.1 | EDZ43034.1 | RB2083_3084 | RB2083_2549 | Transporter; [S] COG3602 Uncharacterized protein conserved in bacteria. | Hypothetical protein. | 0.424 |
EDZ43569.1 | EDZ43597.1 | RB2083_3084 | RB2083_3112 | Transporter; [S] COG3602 Uncharacterized protein conserved in bacteria. | UvrD/REP helicase domain protein; [L] COG0210 Superfamily I DNA and RNA helicases. | 0.746 |
EDZ43569.1 | EDZ44143.1 | RB2083_3084 | RB2083_3658 | Transporter; [S] COG3602 Uncharacterized protein conserved in bacteria. | Hemolysin-type calcium-binding region; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit. | 0.419 |
EDZ43597.1 | EDZ43034.1 | RB2083_3112 | RB2083_2549 | UvrD/REP helicase domain protein; [L] COG0210 Superfamily I DNA and RNA helicases. | Hypothetical protein. | 0.412 |
EDZ43597.1 | EDZ43569.1 | RB2083_3112 | RB2083_3084 | UvrD/REP helicase domain protein; [L] COG0210 Superfamily I DNA and RNA helicases. | Transporter; [S] COG3602 Uncharacterized protein conserved in bacteria. | 0.746 |
EDZ43597.1 | EDZ44143.1 | RB2083_3112 | RB2083_3658 | UvrD/REP helicase domain protein; [L] COG0210 Superfamily I DNA and RNA helicases. | Hemolysin-type calcium-binding region; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit. | 0.419 |
EDZ44143.1 | EDZ43034.1 | RB2083_3658 | RB2083_2549 | Hemolysin-type calcium-binding region; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit. | Hypothetical protein. | 0.762 |
EDZ44143.1 | EDZ43569.1 | RB2083_3658 | RB2083_3084 | Hemolysin-type calcium-binding region; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit. | Transporter; [S] COG3602 Uncharacterized protein conserved in bacteria. | 0.419 |
EDZ44143.1 | EDZ43597.1 | RB2083_3658 | RB2083_3112 | Hemolysin-type calcium-binding region; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit. | UvrD/REP helicase domain protein; [L] COG0210 Superfamily I DNA and RNA helicases. | 0.419 |