Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| EDZ43133.1 | ccmA | RB2083_2648 | RB2083_3866 | [S] COG3737 Uncharacterized conserved protein. | Heme ABC exporter, ATP-binding protein CcmA; Part of the ABC transporter complex CcmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. CcmA exporter (TC 3.A.1.107) family. | 0.852 |
| EDZ43133.1 | ccmB | RB2083_2648 | RB2083_2824 | [S] COG3737 Uncharacterized conserved protein. | Heme exporter protein CcmB; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmB/CycW/HelB family. | 0.852 |
| EDZ43133.1 | ccmC | RB2083_2648 | RB2083_2594 | [S] COG3737 Uncharacterized conserved protein. | Heme exporter protein; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmC/CycZ/HelC family. | 0.729 |
| EDZ43133.1 | dsbE | RB2083_2648 | RB2083_820 | [S] COG3737 Uncharacterized conserved protein. | Thiol 3A-disulfide interchange protein; [OC] COG0526 Thiol-disulfide isomerase and thioredoxins. | 0.563 |
| EDZ43133.1 | secF | RB2083_2648 | RB2083_3688 | [S] COG3737 Uncharacterized conserved protein. | Protein-export membrane protein SecF; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA. | 0.836 |
| EDZ43463.1 | ccmA | RB2083_2978 | RB2083_3866 | Cytochrome c biogenesis family protein; Possible subunit of a heme lyase. | Heme ABC exporter, ATP-binding protein CcmA; Part of the ABC transporter complex CcmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. CcmA exporter (TC 3.A.1.107) family. | 0.833 |
| EDZ43463.1 | ccmB | RB2083_2978 | RB2083_2824 | Cytochrome c biogenesis family protein; Possible subunit of a heme lyase. | Heme exporter protein CcmB; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmB/CycW/HelB family. | 0.846 |
| EDZ43463.1 | ccmC | RB2083_2978 | RB2083_2594 | Cytochrome c biogenesis family protein; Possible subunit of a heme lyase. | Heme exporter protein; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmC/CycZ/HelC family. | 0.876 |
| EDZ43463.1 | ccmD | RB2083_2978 | RB2083_3032 | Cytochrome c biogenesis family protein; Possible subunit of a heme lyase. | Heme exporter protein CcmD; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmD/CycX/HelD family. | 0.502 |
| EDZ43463.1 | ccmF | RB2083_2978 | RB2083_828 | Cytochrome c biogenesis family protein; Possible subunit of a heme lyase. | Cytochrome c-type biogenesis protein CcmF; [O] COG1138 Cytochrome c biogenesis factor. | 0.999 |
| EDZ43463.1 | cycJ | RB2083_2978 | RB2083_1346 | Cytochrome c biogenesis family protein; Possible subunit of a heme lyase. | Cytochrome c-type biogenesis protein; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH. Belongs to the CcmE/CycJ family. | 0.949 |
| EDZ43463.1 | dsbE | RB2083_2978 | RB2083_820 | Cytochrome c biogenesis family protein; Possible subunit of a heme lyase. | Thiol 3A-disulfide interchange protein; [OC] COG0526 Thiol-disulfide isomerase and thioredoxins. | 0.940 |
| ccmA | EDZ43133.1 | RB2083_3866 | RB2083_2648 | Heme ABC exporter, ATP-binding protein CcmA; Part of the ABC transporter complex CcmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. CcmA exporter (TC 3.A.1.107) family. | [S] COG3737 Uncharacterized conserved protein. | 0.852 |
| ccmA | EDZ43463.1 | RB2083_3866 | RB2083_2978 | Heme ABC exporter, ATP-binding protein CcmA; Part of the ABC transporter complex CcmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. CcmA exporter (TC 3.A.1.107) family. | Cytochrome c biogenesis family protein; Possible subunit of a heme lyase. | 0.833 |
| ccmA | ccmB | RB2083_3866 | RB2083_2824 | Heme ABC exporter, ATP-binding protein CcmA; Part of the ABC transporter complex CcmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. CcmA exporter (TC 3.A.1.107) family. | Heme exporter protein CcmB; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmB/CycW/HelB family. | 0.999 |
| ccmA | ccmC | RB2083_3866 | RB2083_2594 | Heme ABC exporter, ATP-binding protein CcmA; Part of the ABC transporter complex CcmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. CcmA exporter (TC 3.A.1.107) family. | Heme exporter protein; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmC/CycZ/HelC family. | 0.999 |
| ccmA | ccmD | RB2083_3866 | RB2083_3032 | Heme ABC exporter, ATP-binding protein CcmA; Part of the ABC transporter complex CcmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. CcmA exporter (TC 3.A.1.107) family. | Heme exporter protein CcmD; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmD/CycX/HelD family. | 0.924 |
| ccmA | ccmF | RB2083_3866 | RB2083_828 | Heme ABC exporter, ATP-binding protein CcmA; Part of the ABC transporter complex CcmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. CcmA exporter (TC 3.A.1.107) family. | Cytochrome c-type biogenesis protein CcmF; [O] COG1138 Cytochrome c biogenesis factor. | 0.830 |
| ccmA | cycJ | RB2083_3866 | RB2083_1346 | Heme ABC exporter, ATP-binding protein CcmA; Part of the ABC transporter complex CcmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. CcmA exporter (TC 3.A.1.107) family. | Cytochrome c-type biogenesis protein; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH. Belongs to the CcmE/CycJ family. | 0.929 |
| ccmA | dsbE | RB2083_3866 | RB2083_820 | Heme ABC exporter, ATP-binding protein CcmA; Part of the ABC transporter complex CcmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. CcmA exporter (TC 3.A.1.107) family. | Thiol 3A-disulfide interchange protein; [OC] COG0526 Thiol-disulfide isomerase and thioredoxins. | 0.843 |
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