STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDZ43430.1phytanoyl-CoA dioxygenase family protein; [Q] COG5285 Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin. (295 aa)    
Predicted Functional Partners:
EDZ43349.1
Trap dicarboxylate transporter, dctq subunit; [G] COG3090 TRAP-type C4-dicarboxylate transport system, small permease component.
 
     0.881
EDZ42924.1
Oxidoreductase, Gfo/Idh/MocA family; [R] COG0673 Predicted dehydrogenases and related proteins.
 
    0.871
EDZ44496.1
Trap dicarboxylate transporter, dctm subunit; [G] COG1593 TRAP-type C4-dicarboxylate transport system, large permease component.
 
     0.862
uxaA
[G] COG2721 Altronate dehydratase.
 
     0.855
ectC
L-ectoine synthase protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
 
  
 0.826
EDZ42594.1
DMT superfamily, permease; [GER] COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily.
 
     0.806
garR_1
2-hydroxy-3-oxopropionate reductase; [G] COG0362 6-phosphogluconate dehydrogenase.
 
     0.791
EDZ41438.1
Phytanoyl-CoA dioxygenase superfamily; [Q] COG5285 Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin.
 
    
0.783
EDZ42107.1
Trap dicarboxylate transporter, dctp subunit, putative; [G] COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component.
 
     0.773
kdgK
2-dehydro-3-deoxygluconokinase; [G] COG0524 Sugar kinases, ribokinase family.
       0.727
Your Current Organism:
Rhodobacteraceae bacterium HTCC2083
NCBI taxonomy Id: 314270
Other names: R. bacterium HTCC2083, Rhodobacterales bacterium HTCC2083
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