STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
urtC_1Urea ABC transporter, permease protein UrtC; [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components. (409 aa)    
Predicted Functional Partners:
EDZ41834.1
[E] COG0559 Branched-chain amino acid ABC-type transport system, permease components; Belongs to the binding-protein-dependent transport system permease family.
 
 0.999
urtD_1
Urea ABC transporter, ATP-binding protein UrtD; [G] COG1129 ABC-type sugar transport system, ATPase component.
 
 0.999
urtE
Urea ABC transporter, ATP-binding protein UrtE; [E] COG3842 ABC-type spermidine/putrescine transport systems, ATPase components.
 
  0.997
EDZ44575.1
[E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component.
 
 
 0.996
urtB
[G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components.
 
 0.953
EDZ42741.1
Nitrile hydratase regulator1; [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component.
 
 
 0.897
urtA
ABC-type urea transport system, substrate-binding protein; [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component.
 
 
 0.891
urtD_2
ABC-type urea transport system, ATP-binding protein I; [G] COG1129 ABC-type sugar transport system, ATPase component.
 
 0.867
EDZ41511.1
ABC transporter, permease/ATP-binding protein; [G] COG1129 ABC-type sugar transport system, ATPase component.
 
  0.781
EDZ42405.1
Inner-membrane translocator; [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components.
 
 0.766
Your Current Organism:
Rhodobacteraceae bacterium HTCC2083
NCBI taxonomy Id: 314270
Other names: R. bacterium HTCC2083, Rhodobacterales bacterium HTCC2083
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