STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDZ43531.1Conserved hypothetical protein; [R] COG0730 Predicted permeases. (249 aa)    
Predicted Functional Partners:
xsc
Sulphoacetaldehyde acetyltransferase; [EH] COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase]; Belongs to the TPP enzyme family.
 
     0.804
pta
Phosphate acetyltransferase; [C] COG0280 Phosphotransacetylase.
       0.781
EDZ41620.1
Molybdopterin oxidoreductase Fe4S4 domain family; [C] COG5013 Nitrate reductase alpha subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
     0.747
tauR
Transcriptional regulator; [E] COG0436 Aspartate/tyrosine/aromatic aminotransferase.
 
     0.666
dmsC
[R] COG3302 DMSO reductase anchor subunit.
 
     0.599
EDZ43943.1
4Fe-4S binding domain protein; [C] COG1145 Ferredoxin.
 
    0.563
tauA
Taurine ABC transporter, periplasmic binding protein; [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components.
 
     0.500
EDZ44255.1
Conserved hypothetical protein.
  
     0.457
EDZ41689.1
Periplasmic serine protease, DO/DeqQ family; [O] COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain.
    
 
 0.447
EDZ41006.1
Peptidoglycan binding domain protein.
    
 
 0.447
Your Current Organism:
Rhodobacteraceae bacterium HTCC2083
NCBI taxonomy Id: 314270
Other names: R. bacterium HTCC2083, Rhodobacterales bacterium HTCC2083
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