STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDZ40794.1Hypothetical transporter; [H] COG0190 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase. (104 aa)    
Predicted Functional Partners:
EDZ41008.1
Hypothetical protein.
       0.510
dxnH
[I] COG2057 Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit.
  
  
 0.465
EDZ43521.1
Ycii-related domain protein; [S] COG2350 Uncharacterized protein conserved in bacteria.
  
    0.439
EDZ43644.1
Aromatic-ring-hydroxylating dioxygenase, beta subunit; [Q] COG5517 Small subunit of phenylpropionate dioxygenase.
  
  
 0.401
Your Current Organism:
Rhodobacteraceae bacterium HTCC2083
NCBI taxonomy Id: 314270
Other names: R. bacterium HTCC2083, Rhodobacterales bacterium HTCC2083
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