STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDZ43576.1Trap dicarboxylate transporter- dctp subunit; [Q] COG4663 TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component. (336 aa)    
Predicted Functional Partners:
EDZ41310.1
[G] COG1593 TRAP-type C4-dicarboxylate transport system, large permease component.
 
    0.900
EDZ41723.1
Tripartite ATP-independent periplasmic transporter, DctQ component.
 
     0.895
EDZ42786.1
Transcriptional regulator, LacI family; [K] COG1609 Transcriptional regulators.
       0.551
glpK
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.
       0.440
EDZ42707.1
Tat pathway signal sequence domain protein.
  
     0.438
EDZ40667.1
Conserved hypothetical protein.
  
     0.437
EDZ42294.1
Conserved hypothetical protein.
  
     0.422
EDZ40937.1
Conserved hypothetical protein.
  
     0.418
EDZ41669.1
Trap-t family transporter, fused small and large inner membrane subunit; [S] COG1784 Predicted membrane protein.
       0.416
EDZ42518.1
Conserved hypothetical protein.
       0.416
Your Current Organism:
Rhodobacteraceae bacterium HTCC2083
NCBI taxonomy Id: 314270
Other names: R. bacterium HTCC2083, Rhodobacterales bacterium HTCC2083
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.