STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDZ43622.1Phospholipase, patatin family; [R] COG1752 Predicted esterase of the alpha-beta hydrolase superfamily. (144 aa)    
Predicted Functional Partners:
RB2083_75
Patatin; [R] COG1752 Predicted esterase of the alpha-beta hydrolase superfamily.
     0.994
EDZ40659.1
ATPase; [R] COG0433 Predicted ATPase.
       0.781
phbC
Poly-beta-hydroxybutyrate polymerase; [I] COG3243 Poly(3-hydroxyalkanoate) synthetase.
 
   
 0.692
EDZ42768.1
Aerobic respiration control sensor protein ArcB, putative; [T] COG0642 Signal transduction histidine kinase.
  
  
 0.520
EDZ44111.1
[IQR] COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
  
  
  0.512
EDZ40636.1
Phospholipase D/Transphosphatidylase; [I] COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardiolipi n synthases and related enzymes.
  
 
 0.495
EDZ44079.1
Phospholipase/carboxylesterase family protein; [Q] COG3509 Poly(3-hydroxybutyrate) depolymerase.
 
  
  0.490
EDZ42766.1
[R] COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
     
 0.486
phaZ
Polyhydroxyalkanoate depolymerase, intracellular; [I] COG4553 Poly-beta-hydroxyalkanoate depolymerase.
  
     0.467
phbB
acetoacetyl-CoA reductase; [IQR] COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
  
  
  0.448
Your Current Organism:
Rhodobacteraceae bacterium HTCC2083
NCBI taxonomy Id: 314270
Other names: R. bacterium HTCC2083, Rhodobacterales bacterium HTCC2083
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