STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDZ43706.1Permease; [R] COG0730 Predicted permeases. (276 aa)    
Predicted Functional Partners:
EDZ40997.1
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
 
     0.965
EDZ41210.1
[T] COG0589 Universal stress protein UspA and related nucleotide-binding proteins.
 
   
 0.799
EDZ43091.1
Sugar ABC transporter, permease protein; [R] COG1079 Uncharacterized ABC-type transport system, permease component; Belongs to the binding-protein-dependent transport system permease family.
       0.656
EDZ40847.1
[R] COG1744 Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein.
       0.580
EDZ41688.1
Sugar ABC transporter, permease protein; [E] COG0559 Branched-chain amino acid ABC-type transport system, permease components; Belongs to the binding-protein-dependent transport system permease family.
       0.532
EDZ44279.1
Sugar ABC transporter, ATP-binding protein; [G] COG1129 ABC-type sugar transport system, ATPase component.
  
    0.529
EDZ41714.1
Conserved hypothetical protein.
       0.473
EDZ41689.1
Periplasmic serine protease, DO/DeqQ family; [O] COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain.
    
 
 0.447
EDZ41006.1
Peptidoglycan binding domain protein.
    
 
 0.447
degQ
Protease DegQ; [O] COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain; Belongs to the peptidase S1C family.
    
 
 0.447
Your Current Organism:
Rhodobacteraceae bacterium HTCC2083
NCBI taxonomy Id: 314270
Other names: R. bacterium HTCC2083, Rhodobacterales bacterium HTCC2083
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.