STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDZ43852.1Thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein; [M] COG0859 ADP-heptose:LPS heptosyltransferase. (718 aa)    
Predicted Functional Partners:
EDZ43731.1
Indolepyruvate ferredoxin oxidoreductase, beta subunit; [O] COG0691 tmRNA-binding protein.
 
 0.986
sdhA
Succinate dehydrogenase, flavoprotein subunit; [H] COG0029 Aspartate oxidase; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.
  
 0.899
EDZ43094.1
3-ketosteroid dehydrogenase, putative; [H] COG0029 Aspartate oxidase.
  
 0.899
sat
Sulfate adenylyltransferase; Catalyzes the synthesis of activated sulfate.
  
 
 0.886
EDZ41258.1
Transcriptional regulator, MarR family; [K] COG1846 Transcriptional regulators.
 
     0.882
EDZ41396.1
Hypothetical protein; [C] COG2218 Formylmethanofuran dehydrogenase subunit C; Conserved region in glutamate synthase family.
     
 0.857
fdhB_1
Formate dehydrogenase, beta subunit; [O] COG0443 Molecular chaperone.
    
 0.831
EDZ40903.1
Iron-sulfur cluster-binding protein; [G] COG0676 Uncharacterized enzymes related to aldose 1-epimerase.
  
 
 0.811
EDZ43598.1
Short-chain dehydrogenase/reductase SDR; [IQR] COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
 
  
 0.807
EDZ41570.1
Cyclase family protein; [R] COG1878 Predicted metal-dependent hydrolase.
 
     0.794
Your Current Organism:
Rhodobacteraceae bacterium HTCC2083
NCBI taxonomy Id: 314270
Other names: R. bacterium HTCC2083, Rhodobacterales bacterium HTCC2083
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